SNP Report
Basic Infomation
| Name | rs58431028 dbSNP |
|---|---|
| Location | chr:11,61128468 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1108769 | 0.83[ASN][1000 genomes] |
| rs11230650 | 0.83[ASN][1000 genomes] |
| rs11230658 | 0.83[ASN][1000 genomes] |
| rs11230664 | 0.83[ASN][1000 genomes] |
| rs11230666 | 0.83[ASN][1000 genomes] |
| rs1132797 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11822158 | 0.83[ASN][1000 genomes] |
| rs12099051 | 0.83[AMR][1000 genomes] |
| rs12275530 | 0.83[ASN][1000 genomes] |
| rs12275843 | 0.83[ASN][1000 genomes] |
| rs12277294 | 0.83[ASN][1000 genomes] |
| rs12286866 | 0.83[ASN][1000 genomes] |
| rs12289370 | 0.83[ASN][1000 genomes] |
| rs12290116 | 0.83[ASN][1000 genomes] |
| rs2260655 | 0.83[ASN][1000 genomes] |
| rs2286878 | 0.88[ASN][1000 genomes] |
| rs2305465 | 0.83[ASN][1000 genomes] |
| rs2512811 | 0.83[ASN][1000 genomes] |
| rs2512812 | 0.83[ASN][1000 genomes] |
| rs2513330 | 0.83[ASN][1000 genomes] |
| rs28720249 | 0.88[ASN][1000 genomes] |
| rs28720255 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28720261 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28720297 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28720301 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28720334 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs28720346 | 0.88[ASN][1000 genomes] |
| rs28720355 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs3741268 | 0.83[ASN][1000 genomes] |
| rs3972757 | 0.88[ASN][1000 genomes] |
| rs4939514 | 0.83[ASN][1000 genomes] |
| rs4939515 | 0.83[ASN][1000 genomes] |
| rs4939517 | 0.88[ASN][1000 genomes] |
| rs56269746 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs56352432 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs60802278 | 1.00[EUR][1000 genomes] |
| rs60818979 | 1.00[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs61061872 | 0.83[ASN][1000 genomes] |
| rs61554568 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs61744427 | 0.83[ASN][1000 genomes] |
| rs6591650 | 0.83[ASN][1000 genomes] |
| rs7107608 | 0.83[ASN][1000 genomes] |
| rs7108142 | 0.83[ASN][1000 genomes] |
| rs7108797 | 0.83[ASN][1000 genomes] |
| rs7118023 | 0.83[ASN][1000 genomes] |
| rs7120594 | 0.83[ASN][1000 genomes] |
| rs73490303 | 0.83[ASN][1000 genomes] |
| rs7397033 | 0.83[ASN][1000 genomes] |
| rs7934735 | 0.83[ASN][1000 genomes] |
| rs7951574 | 0.88[ASN][1000 genomes] |
| rs9704187 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM138 | Proximal transcriptional regulation |
| CYBASC3 | Proximal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
| TMEM216 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| CYBASC3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014