SNP Report

Basic Infomation

Name	rs10897150 dbSNP
Location	chr:11,61063156
Allele	T/G

LD-proxy of rSNPs(r²>0.8) (count: 37)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1037448	0.88[YRI][hapmap]
rs10792312	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1108769	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11230650	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11230658	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11230659	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs11230664	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11230666	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11822158	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap]
rs12275843	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs12277294	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12289370	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs1377457	0.81[YRI][hapmap]
rs2001746	0.84[AMR][1000 genomes]
rs2260655	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2286878	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2305465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2512809	1.00[CHB][hapmap];0.96[YRI][hapmap];0.82[AFR][1000 genomes]
rs2512811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs2513329	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs2513330	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3741268	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs3972757	1.00[JPT][hapmap]
rs4939513	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes]
rs4939517	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs6591650	0.84[AMR][1000 genomes]
rs6591651	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7108142	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs7108797	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7111608	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs7118023	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73490303	0.88[AMR][1000 genomes]
rs7397033	1.00[CHB][hapmap]
rs7934735	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7951574	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9651726	1.00[JPT][hapmap]
rs9704187	0.81[AMR][1000 genomes]

rSNP related genes

Symbol	Regulation type
VWCE	Proximal transcriptional regulation
DDB1	Distal transcriptional regulation
ENSG00000256591	Distal transcriptional regulation
CPSF7	Distal transcriptional regulation
SDHAF2	Distal transcriptional regulation
H1FX-AS1	Distal transcriptional regulation
H1FX	Distal transcriptional regulation
DAK	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)