SNP Report
Basic Infomation
| Name | rs2508466 dbSNP |
|---|---|
| Location | chr:11,61015323 |
| Allele | C/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792312 | 0.83[CHD][hapmap] |
| rs11230643 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230658 | 0.83[CHD][hapmap] |
| rs11230664 | 0.83[CHD][hapmap] |
| rs11230666 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs11822158 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs12275843 | 0.83[CHD][hapmap] |
| rs12277294 | 0.83[CHD][hapmap] |
| rs2260655 | 0.83[CHD][hapmap] |
| rs2512809 | 0.83[CHD][hapmap] |
| rs2512811 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs2513330 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs3741268 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs3972757 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs4939513 | 0.83[CHD][hapmap] |
| rs4939514 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs4939517 | 0.83[CHD][hapmap] |
| rs7108142 | 0.83[CHD][hapmap];1.00[TSI][hapmap] |
| rs7108797 | 0.83[CHD][hapmap] |
| rs7111608 | 0.83[CHD][hapmap] |
| rs7118023 | 0.83[CHD][hapmap] |
| rs7951574 | 0.83[CHD][hapmap] |
| rs9651726 | 0.83[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PGA5 | Proximal transcriptional regulation |
| ENSG00000256220 | RNA binding protein mediated regulation |
| PGA4 | RNA binding protein mediated regulation |
| PGA5 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014