SNP Report
Basic Infomation
| Name | rs2943808 dbSNP |
|---|---|
| Location | chr:11,61265694 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792312 | 0.82[ASW][hapmap] |
| rs10897158 | 0.82[ASW][hapmap] |
| rs11230664 | 0.82[ASW][hapmap] |
| rs11230715 | 1.00[CHB][hapmap] |
| rs11230725 | 1.00[CHB][hapmap] |
| rs11605791 | 0.87[ASN][1000 genomes] |
| rs11607904 | 0.87[ASN][1000 genomes] |
| rs12786964 | 1.00[CHB][hapmap] |
| rs12789378 | 1.00[CHB][hapmap] |
| rs12791961 | 0.82[ASW][hapmap] |
| rs12795113 | 1.00[CHB][hapmap] |
| rs12806401 | 1.00[CHB][hapmap] |
| rs1377456 | 1.00[CHB][hapmap] |
| rs2860519 | 0.82[ASW][hapmap] |
| rs2924444 | 0.87[EUR][1000 genomes] |
| rs2943807 | 0.82[ASW][hapmap] |
| rs2943813 | 0.83[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs2957857 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2957858 | 0.83[TSI][hapmap] |
| rs3017596 | 0.87[EUR][1000 genomes] |
| rs3017602 | 0.81[ASW][hapmap] |
| rs3019186 | 0.81[AFR][1000 genomes] |
| rs3019187 | 0.83[TSI][hapmap] |
| rs3019198 | 0.82[ASW][hapmap] |
| rs56408067 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs720888 | 0.81[YRI][hapmap] |
| rs7607 | 0.82[ASW][hapmap] |
| rs7931683 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs7947046 | 1.00[CHD][hapmap] |
| rs7951574 | 0.82[ASW][hapmap] |
| rs879647 | 0.82[ASW][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000124915 | Distal transcriptional regulation |
| HIST1H2AH | Distal transcriptional regulation |
| MIR3143 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| SCG5 | Distal transcriptional regulation |
| ENSG00000241818 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014