SNP Report
Basic Infomation
| Name | rs3017596 dbSNP |
|---|---|
| Location | chr:11,61273150 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792315 | 0.96[ASN][1000 genomes] |
| rs11230719 | 0.86[ASN][1000 genomes] |
| rs11230720 | 0.86[ASN][1000 genomes] |
| rs11230721 | 0.86[ASN][1000 genomes] |
| rs11230726 | 0.93[ASN][1000 genomes] |
| rs11230727 | 0.93[ASN][1000 genomes] |
| rs12805182 | 0.96[ASN][1000 genomes] |
| rs2924444 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2943808 | 0.87[EUR][1000 genomes] |
| rs2943813 | 0.87[EUR][1000 genomes] |
| rs2957857 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3802950 | 0.93[ASN][1000 genomes] |
| rs3802951 | 0.96[ASN][1000 genomes] |
| rs3802952 | 0.93[ASN][1000 genomes] |
| rs56408067 | 0.95[EUR][1000 genomes] |
| rs56788999 | 0.86[ASN][1000 genomes] |
| rs57970255 | 0.86[ASN][1000 genomes] |
| rs58418249 | 0.86[ASN][1000 genomes] |
| rs60685164 | 0.86[ASN][1000 genomes] |
| rs61510428 | 0.86[ASN][1000 genomes] |
| rs61686112 | 0.86[ASN][1000 genomes] |
| rs71490326 | 0.86[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRC10B | Proximal transcriptional regulation |
| MIR4488 | Proximal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014