SNP Report
Basic Infomation
| Name | rs61510428 dbSNP |
|---|---|
| Location | chr:11,61271319 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10792315 | 0.89[ASN][1000 genomes] |
| rs11230717 | 0.95[EUR][1000 genomes] |
| rs11230719 | 0.94[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230720 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230721 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230724 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230725 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230726 | 0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11230727 | 0.97[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs12786964 | 1.00[EUR][1000 genomes] |
| rs12789378 | 1.00[EUR][1000 genomes] |
| rs12798315 | 1.00[EUR][1000 genomes] |
| rs12798857 | 1.00[EUR][1000 genomes] |
| rs12800537 | 1.00[EUR][1000 genomes] |
| rs12802349 | 0.95[EUR][1000 genomes] |
| rs12805182 | 0.89[ASN][1000 genomes] |
| rs12806401 | 0.95[EUR][1000 genomes] |
| rs1807217 | 0.82[EUR][1000 genomes] |
| rs2924444 | 0.86[ASN][1000 genomes] |
| rs3017596 | 0.86[ASN][1000 genomes] |
| rs34710222 | 0.90[EUR][1000 genomes] |
| rs35020107 | 1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs35210023 | 0.89[EUR][1000 genomes] |
| rs3802950 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3802951 | 0.84[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3802952 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs56788999 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs57970255 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs58418249 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59775451 | 0.83[ASN][1000 genomes] |
| rs60685164 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61686112 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71490326 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRC10B | Proximal transcriptional regulation |
| MIR4488 | Proximal transcriptional regulation |
| PRPF19 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014