SNP Report
Basic Infomation
| Name | rs12800537 dbSNP |
|---|---|
| Location | chr:11,61265167 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 31)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230714 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230715 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230717 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230719 | 0.85[AMR][1000 genomes] |
| rs11230720 | 1.00[EUR][1000 genomes] |
| rs11230721 | 1.00[EUR][1000 genomes] |
| rs11230724 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11230725 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11605791 | 0.80[AMR][1000 genomes] |
| rs11607904 | 0.80[AMR][1000 genomes] |
| rs12786837 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12786964 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12789378 | 1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12795113 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12798315 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12798857 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12802349 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12806401 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12806665 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1807217 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34710222 | 0.94[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs35020107 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35033583 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35210023 | 1.00[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3802950 | 1.00[EUR][1000 genomes] |
| rs3802952 | 1.00[EUR][1000 genomes] |
| rs58418249 | 1.00[EUR][1000 genomes] |
| rs61510428 | 1.00[EUR][1000 genomes] |
| rs61686112 | 1.00[EUR][1000 genomes] |
| rs71477600 | 1.00[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs71490326 | 1.00[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000124915 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014