SNP Report

Basic Infomation

Name	rs11230725 dbSNP
Location	chr:11,61272982
Allele	G/C

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11230714	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11230715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs11230717	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11230719	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11230720	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11230721	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11230724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11230726	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs11230727	1.00[CEU][hapmap];0.91[AMR][1000 genomes]
rs11605791	0.86[ASN][1000 genomes]
rs11607904	0.86[ASN][1000 genomes]
rs12786837	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12786964	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12789378	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12795113	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12798315	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12798857	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12800537	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12802349	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12806401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12806665	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1377456	1.00[CHB][hapmap]
rs1807217	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2943808	1.00[CHB][hapmap]
rs2957857	1.00[CHB][hapmap]
rs34710222	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35020107	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35033583	0.85[AMR][1000 genomes]
rs35210023	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3802950	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3802952	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56788999	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs57970255	0.94[AMR][1000 genomes]
rs58418249	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60685164	0.94[AMR][1000 genomes]
rs61510428	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61686112	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71477600	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs71490326	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7931683	1.00[CHB][hapmap];0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
LRRC10B	Proximal transcriptional regulation
MIR4488	Proximal transcriptional regulation
PRPF19	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)