SNP Report
Basic Infomation
| Name | rs2957857 dbSNP |
|---|---|
| Location | chr:11,61261517 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230715 | 1.00[CHB][hapmap] |
| rs11230725 | 1.00[CHB][hapmap] |
| rs11605791 | 0.87[ASN][1000 genomes] |
| rs11607904 | 0.87[ASN][1000 genomes] |
| rs12786964 | 1.00[CHB][hapmap] |
| rs12789378 | 1.00[CHB][hapmap] |
| rs12795113 | 1.00[CHB][hapmap] |
| rs12806401 | 1.00[CHB][hapmap] |
| rs1377456 | 1.00[CHB][hapmap] |
| rs2924444 | 0.94[EUR][1000 genomes] |
| rs2943808 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.82[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2943813 | 0.90[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs2957858 | 0.80[CEU][hapmap] |
| rs3017596 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs56408067 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7931683 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs7947046 | 1.00[CHD][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255931 | Proximal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014