SNP Report
Basic Infomation
| Name | rs2957858 dbSNP |
|---|---|
| Location | chr:11,61253973 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 39)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12272456 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs1377456 | 1.00[JPT][hapmap] |
| rs17702 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2277285 | 0.83[ASN][1000 genomes] |
| rs2860196 | 0.83[ASN][1000 genomes] |
| rs2860519 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs2924435 | 0.83[ASN][1000 genomes] |
| rs2924441 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2924442 | 0.83[ASN][1000 genomes] |
| rs2943800 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2943805 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2943806 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs2943807 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs2943808 | 0.83[TSI][hapmap] |
| rs2943813 | 0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2957857 | 0.80[CEU][hapmap] |
| rs2957860 | 0.82[CEU][hapmap] |
| rs3017602 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs3017605 | 0.88[CEU][hapmap] |
| rs3018726 | 0.83[ASN][1000 genomes] |
| rs3018727 | 1.00[JPT][hapmap] |
| rs3018731 | 1.00[JPT][hapmap] |
| rs3018732 | 0.83[ASN][1000 genomes] |
| rs3018733 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3019186 | 1.00[JPT][hapmap] |
| rs3019187 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.89[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3019188 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3019198 | 1.00[JPT][hapmap] |
| rs3019200 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs3741265 | 1.00[JPT][hapmap] |
| rs3809083 | 1.00[JPT][hapmap] |
| rs6591654 | 1.00[JPT][hapmap] |
| rs720888 | 1.00[JPT][hapmap] |
| rs7607 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs7934229 | 0.83[ASN][1000 genomes] |
| rs879647 | 0.83[CHD][hapmap];1.00[JPT][hapmap] |
| rs896831 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs896832 | 1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs921635 | 1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R32 | Proximal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
| RPLP0P2 | Distal transcriptional regulation |
| PPP1R32 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 8)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014