SNP Report
Basic Infomation
| Name | rs2957860 dbSNP |
|---|---|
| Location | chr:11,61245943 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 49)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1037448 | 1.00[CEU][hapmap] |
| rs10750955 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10897158 | 0.93[CEU][hapmap] |
| rs11230659 | 0.93[CEU][hapmap] |
| rs11230692 | 0.88[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1377456 | 0.93[CEU][hapmap] |
| rs17702 | 0.93[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2860519 | 0.93[CEU][hapmap] |
| rs28720282 | 1.00[ASN][1000 genomes] |
| rs2924435 | 0.81[EUR][1000 genomes] |
| rs2924441 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs2924442 | 0.90[EUR][1000 genomes] |
| rs2924446 | 0.93[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2924447 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2943800 | 1.00[CEU][hapmap];0.90[EUR][1000 genomes] |
| rs2943805 | 0.93[CEU][hapmap] |
| rs2943806 | 0.93[CEU][hapmap] |
| rs2943807 | 0.93[CEU][hapmap] |
| rs2957858 | 0.82[CEU][hapmap] |
| rs2957859 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3017602 | 0.93[CEU][hapmap] |
| rs3017605 | 0.93[CEU][hapmap] |
| rs3018727 | 0.93[CEU][hapmap] |
| rs3018733 | 0.82[CEU][hapmap] |
| rs3018734 | 0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3019186 | 0.93[CEU][hapmap] |
| rs3019187 | 0.82[CEU][hapmap] |
| rs3019188 | 0.82[CEU][hapmap] |
| rs3019198 | 0.93[CEU][hapmap] |
| rs35723406 | 1.00[ASN][1000 genomes] |
| rs3741265 | 0.93[CEU][hapmap] |
| rs3809083 | 0.88[CEU][hapmap] |
| rs4274208 | 1.00[ASN][1000 genomes] |
| rs4939513 | 1.00[CEU][hapmap] |
| rs4939517 | 1.00[CEU][hapmap] |
| rs4939521 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61742921 | 1.00[ASN][1000 genomes] |
| rs6591651 | 0.93[CEU][hapmap] |
| rs6591654 | 0.93[CEU][hapmap] |
| rs7107543 | 1.00[ASN][1000 genomes] |
| rs7111608 | 1.00[CEU][hapmap] |
| rs720888 | 0.91[CEU][hapmap] |
| rs72929133 | 1.00[ASN][1000 genomes] |
| rs7607 | 0.93[CEU][hapmap] |
| rs7934229 | 0.81[EUR][1000 genomes] |
| rs879647 | 0.93[CEU][hapmap] |
| rs896831 | 0.93[CEU][hapmap] |
| rs896832 | 0.93[CEU][hapmap] |
| rs921635 | 0.93[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R32 | Proximal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| RPLP0P2 | Distal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014