SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 21)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10466667	0.85[AMR][1000 genomes]
rs10750955	1.00[ASN][1000 genomes]
rs10897159	0.85[AMR][1000 genomes]
rs11230687	0.85[AMR][1000 genomes]
rs11230692	1.00[ASN][1000 genomes]
rs11827662	0.85[ASW][hapmap];0.85[AMR][1000 genomes]
rs12284488	0.92[ASW][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12289584	0.85[AMR][1000 genomes]
rs12294238	0.95[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17156016	0.83[LWK][hapmap];0.87[AMR][1000 genomes]
rs28720282	1.00[ASN][1000 genomes]
rs2924446	1.00[ASN][1000 genomes]
rs2924447	1.00[ASN][1000 genomes]
rs2957859	1.00[ASN][1000 genomes]
rs2957860	1.00[ASN][1000 genomes]
rs3018734	1.00[ASN][1000 genomes]
rs35723406	1.00[ASN][1000 genomes]
rs4274208	1.00[ASN][1000 genomes]
rs4939521	1.00[ASN][1000 genomes]
rs61742921	1.00[ASN][1000 genomes]
rs72929133	1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
TMEM216	Proximal transcriptional regulation
CCNB1IP1	Distal transcriptional regulation
MAN2C1	Distal transcriptional regulation
DAK	Distal transcriptional regulation
DDB1	Distal transcriptional regulation
CYBASC3	Distal transcriptional regulation
TMEM138	Distal transcriptional regulation
ENSG00000256591	Distal transcriptional regulation
CPSF7	Distal transcriptional regulation
SDHAF2	Distal transcriptional regulation
HIST1H2BC	Distal transcriptional regulation
HIST1H2AC	Distal transcriptional regulation
SYT7	Distal transcriptional regulation
TMEM216	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)