SNP Report
Basic Infomation
| Name | rs2957859 dbSNP |
|---|---|
| Location | chr:11,61251070 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10750955 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230692 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28720282 | 1.00[ASN][1000 genomes] |
| rs2924442 | 0.89[EUR][1000 genomes] |
| rs2924446 | 0.83[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2924447 | 0.84[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2943800 | 0.89[EUR][1000 genomes] |
| rs2957860 | 1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3018734 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3019192 | 0.81[EUR][1000 genomes] |
| rs35723406 | 1.00[ASN][1000 genomes] |
| rs4274208 | 1.00[ASN][1000 genomes] |
| rs4939521 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61742921 | 1.00[ASN][1000 genomes] |
| rs7107543 | 1.00[ASN][1000 genomes] |
| rs72929133 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PPP1R32 | Proximal transcriptional regulation |
| SYT7 | Distal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| ENSG00000256591 | RNA binding protein mediated regulation |
| PPP1R32 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014