SNP Report
Basic Infomation
| Name | rs10750955 dbSNP |
|---|---|
| Location | chr:11,61159661 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 57)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1037448 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs10792314 | 0.83[EUR][1000 genomes] |
| rs10897158 | 0.94[CEU][hapmap];0.92[MEX][hapmap];0.81[TSI][hapmap] |
| rs11230659 | 1.00[CEU][hapmap] |
| rs11230692 | 0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230694 | 0.80[EUR][1000 genomes] |
| rs1377456 | 0.94[CEU][hapmap] |
| rs17702 | 0.83[ASW][hapmap];0.94[CEU][hapmap];0.81[GIH][hapmap];0.95[LWK][hapmap];0.92[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2277285 | 0.82[EUR][1000 genomes] |
| rs2860196 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2860519 | 0.94[CEU][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs28720282 | 1.00[ASN][1000 genomes] |
| rs2924435 | 0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2924441 | 1.00[CEU][hapmap] |
| rs2924442 | 0.87[EUR][1000 genomes] |
| rs2924446 | 0.94[CEU][hapmap];0.87[TSI][hapmap];1.00[ASN][1000 genomes] |
| rs2924447 | 1.00[ASN][1000 genomes] |
| rs2943800 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs2943805 | 0.83[ASW][hapmap];0.94[CEU][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.88[TSI][hapmap];0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs2943806 | 0.83[ASW][hapmap];0.94[CEU][hapmap];0.81[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2943807 | 0.94[CEU][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs2957859 | 0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2957860 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3017602 | 0.94[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap] |
| rs3017605 | 0.87[CEU][hapmap] |
| rs3018726 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3018727 | 0.83[ASW][hapmap];0.94[CEU][hapmap];0.81[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3018734 | 0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3019186 | 0.94[CEU][hapmap] |
| rs3019198 | 0.94[CEU][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs3019199 | 0.81[EUR][1000 genomes] |
| rs3019200 | 0.83[TSI][hapmap] |
| rs35723406 | 1.00[ASN][1000 genomes] |
| rs3741265 | 0.92[ASW][hapmap];0.94[CEU][hapmap];0.81[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs3809083 | 0.94[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs4274208 | 1.00[ASN][1000 genomes] |
| rs4453253 | 1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs4939513 | 1.00[CEU][hapmap] |
| rs4939517 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs4939520 | 0.94[AFR][1000 genomes] |
| rs4939521 | 0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61742921 | 1.00[ASN][1000 genomes] |
| rs6591651 | 1.00[CEU][hapmap] |
| rs6591654 | 0.94[CEU][hapmap] |
| rs7107543 | 1.00[ASN][1000 genomes] |
| rs7111608 | 1.00[CEU][hapmap] |
| rs720888 | 0.92[CEU][hapmap] |
| rs72929133 | 1.00[ASN][1000 genomes] |
| rs7607 | 0.94[CEU][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs7925113 | 0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7934229 | 0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs7945840 | 0.83[EUR][1000 genomes] |
| rs7948623 | 0.88[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs879647 | 0.94[CEU][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.80[EUR][1000 genomes] |
| rs896831 | 0.93[CEU][hapmap];0.81[GIH][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs896832 | 0.83[ASW][hapmap];0.94[CEU][hapmap];0.81[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs921635 | 0.83[ASW][hapmap];0.94[CEU][hapmap];0.81[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM216 | Proximal transcriptional regulation |
| MAN2C1 | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| VPS37C | Distal transcriptional regulation |
| CYBASC3 | Distal transcriptional regulation |
| TMEM138 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| HIST1H2BC | Distal transcriptional regulation |
| HIST1H2AC | Distal transcriptional regulation |
| SYT7 | Distal transcriptional regulation |
| RASSF4 | Distal transcriptional regulation |
| TMEM72-AS1 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 9)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014