SNP Report
Basic Infomation
| Name | rs12802349 dbSNP |
|---|---|
| Location | chr:11,61259386 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 33)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230714 | 0.97[AMR][1000 genomes] |
| rs11230715 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes] |
| rs11230717 | 0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs11230719 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];0.82[AMR][1000 genomes] |
| rs11230720 | 0.95[EUR][1000 genomes] |
| rs11230721 | 0.95[EUR][1000 genomes] |
| rs11230723 | 1.00[YRI][hapmap] |
| rs11230724 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11230725 | 1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11230726 | 1.00[CEU][hapmap];0.94[GIH][hapmap];0.85[MEX][hapmap];1.00[YRI][hapmap] |
| rs11230727 | 1.00[CEU][hapmap] |
| rs12786837 | 0.97[AMR][1000 genomes] |
| rs12786964 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12789378 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12795113 | 1.00[CEU][hapmap];0.97[AMR][1000 genomes] |
| rs12798315 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12798857 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12800537 | 0.97[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12806401 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs12806665 | 0.97[AMR][1000 genomes] |
| rs1807217 | 0.97[AMR][1000 genomes] |
| rs34710222 | 0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs35020107 | 0.82[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs35033583 | 0.97[AMR][1000 genomes] |
| rs35210023 | 0.97[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3802950 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes] |
| rs3802952 | 1.00[CEU][hapmap];0.95[EUR][1000 genomes] |
| rs58418249 | 0.95[EUR][1000 genomes] |
| rs61510428 | 0.95[EUR][1000 genomes] |
| rs61686112 | 0.95[EUR][1000 genomes] |
| rs71477600 | 0.97[AMR][1000 genomes] |
| rs71490326 | 0.95[EUR][1000 genomes] |
| rs7947046 | 1.00[CHB][hapmap];0.81[MEX][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000255931 | Proximal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| SYT7 | Distal transcriptional regulation |
| ENSG00000256591 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| SDHAF2 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014