SNP Report
Basic Infomation
| Name | rs11230723 dbSNP |
|---|---|
| Location | chr:11,61272309 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10897164 | 0.88[AMR][1000 genomes] |
| rs10897165 | 0.91[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes] |
| rs11230718 | 0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11230726 | 1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap] |
| rs11230728 | 0.88[AMR][1000 genomes] |
| rs11230729 | 0.91[CHB][hapmap];0.86[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.87[TSI][hapmap];0.88[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs1139011 | 0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs12786964 | 1.00[YRI][hapmap] |
| rs12789378 | 1.00[YRI][hapmap] |
| rs12802349 | 1.00[YRI][hapmap] |
| rs12806401 | 1.00[YRI][hapmap] |
| rs3802950 | 1.00[YRI][hapmap] |
| rs7125196 | 0.86[CHB][hapmap];0.90[CHD][hapmap];0.86[JPT][hapmap];0.85[MEX][hapmap];0.89[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs751984 | 0.86[CHB][hapmap];0.86[CHD][hapmap];0.90[MEX][hapmap];0.88[AMR][1000 genomes] |
| rs751985 | 0.88[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRC10B | Proximal transcriptional regulation |
| MIR4488 | Proximal transcriptional regulation |
| PRPF19 | Distal transcriptional regulation |
| MIR4488 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| RILP | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014