SNP Report

Basic Infomation

Name	rs7583215 dbSNP
Location	chr:2,102854054
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 36)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10166535	0.91[CEU][hapmap]
rs10198860	0.91[CEU][hapmap]
rs1024791	0.91[CEU][hapmap]
rs11123912	0.88[CHB][hapmap]
rs11123913	0.88[CHB][hapmap];0.92[CHD][hapmap]
rs1117797	0.91[CEU][hapmap]
rs12468673	0.91[CEU][hapmap]
rs13416449	0.91[CEU][hapmap]
rs17026825	0.91[CEU][hapmap]
rs2080311	0.91[CEU][hapmap]
rs2241130	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs2287041	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2302612	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[ASN][1000 genomes]
rs2302620	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs3213734	0.81[CEU][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap]
rs34188221	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3732131	0.86[MEX][hapmap]
rs3755284	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3755285	0.88[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes]
rs3755286	0.85[AMR][1000 genomes]
rs3755287	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs3771181	0.85[AMR][1000 genomes]
rs3771182	0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3771184	0.81[AMR][1000 genomes]
rs3771186	0.91[CEU][hapmap]
rs3771188	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs3821206	0.91[CEU][hapmap]
rs6709635	0.87[CHB][hapmap];0.83[ASN][1000 genomes]
rs6731042	0.86[ASW][hapmap];0.91[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6742931	0.85[ASN][1000 genomes]
rs6754556	0.92[CHB][hapmap];0.85[ASN][1000 genomes]
rs6758443	0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes]
rs7560478	0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap]
rs7572853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7572871	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs955754	0.88[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1RL2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)