SNP Report
Name | rs7583215   dbSNP |
---|---|
Location | chr:2,102854054 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10166535 | 0.91[CEU][hapmap] |
rs10198860 | 0.91[CEU][hapmap] |
rs1024791 | 0.91[CEU][hapmap] |
rs11123912 | 0.88[CHB][hapmap] |
rs11123913 | 0.88[CHB][hapmap];0.92[CHD][hapmap] |
rs1117797 | 0.91[CEU][hapmap] |
rs12468673 | 0.91[CEU][hapmap] |
rs13416449 | 0.91[CEU][hapmap] |
rs17026825 | 0.91[CEU][hapmap] |
rs2080311 | 0.91[CEU][hapmap] |
rs2241130 | 0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap] |
rs2287041 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2302612 | 0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];0.85[ASN][1000 genomes] |
rs2302620 | 0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap] |
rs3213734 | 0.81[CEU][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap] |
rs34188221 | 0.85[AMR][1000 genomes];0.80[EUR][1000 genomes] |
rs3732131 | 0.86[MEX][hapmap] |
rs3755284 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs3755285 | 0.88[CHB][hapmap];0.89[CHD][hapmap];0.81[ASN][1000 genomes] |
rs3755286 | 0.85[AMR][1000 genomes] |
rs3755287 | 0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap] |
rs3771181 | 0.85[AMR][1000 genomes] |
rs3771182 | 0.91[CEU][hapmap];0.88[CHB][hapmap];0.81[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs3771184 | 0.81[AMR][1000 genomes] |
rs3771186 | 0.91[CEU][hapmap] |
rs3771188 | 0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap] |
rs3821206 | 0.91[CEU][hapmap] |
rs6709635 | 0.87[CHB][hapmap];0.83[ASN][1000 genomes] |
rs6731042 | 0.86[ASW][hapmap];0.91[CEU][hapmap];0.88[CHB][hapmap];0.89[CHD][hapmap];0.93[LWK][hapmap];0.91[MEX][hapmap];0.83[MKK][hapmap];0.89[TSI][hapmap];0.87[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6742931 | 0.85[ASN][1000 genomes] |
rs6754556 | 0.92[CHB][hapmap];0.85[ASN][1000 genomes] |
rs6758443 | 0.88[CHB][hapmap];0.92[CHD][hapmap];0.82[ASN][1000 genomes] |
rs7560478 | 0.91[CEU][hapmap];0.91[MEX][hapmap];0.83[TSI][hapmap] |
rs7572853 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7572871 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs955754 | 0.88[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
IL1RL2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014