SNP Report
Basic Infomation
| Name | rs3732131 dbSNP |
|---|---|
| Location | chr:2,102794603 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 28)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10166535 | 0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs10184597 | 0.90[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs10198860 | 0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs1024791 | 0.90[YRI][hapmap] |
| rs1117797 | 0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs12467251 | 0.83[AMR][1000 genomes] |
| rs12468673 | 0.85[YRI][hapmap];0.81[AMR][1000 genomes] |
| rs12474373 | 0.81[AMR][1000 genomes] |
| rs13416449 | 0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs17026825 | 0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs2080311 | 0.90[YRI][hapmap];0.81[AMR][1000 genomes] |
| rs2241130 | 0.95[MEX][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs2287041 | 0.95[MEX][hapmap] |
| rs2302620 | 0.95[MEX][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs3213734 | 0.84[LWK][hapmap];0.86[MEX][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs3732134 | 0.93[JPT][hapmap] |
| rs3755287 | 0.95[MEX][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs3771184 | 0.81[YRI][hapmap] |
| rs3771186 | 0.90[YRI][hapmap] |
| rs3771188 | 0.95[MEX][hapmap];0.90[YRI][hapmap];0.82[AMR][1000 genomes] |
| rs3821206 | 0.95[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs6731042 | 0.95[MEX][hapmap] |
| rs7421586 | 0.82[AMR][1000 genomes] |
| rs7560478 | 0.84[LWK][hapmap];0.95[MEX][hapmap];0.82[MKK][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes] |
| rs7572871 | 0.82[YRI][hapmap] |
| rs7583215 | 0.86[MEX][hapmap] |
| rs7599472 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs951192 | 0.94[YRI][hapmap];0.85[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1R1 | Proximal transcriptional regulation |
| ENSG00000226925 | RNA binding protein mediated regulation |
| IL1R1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| LAP3 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014