SNP Report
Basic Infomation
| Name | rs3771184 dbSNP |
|---|---|
| Location | chr:2,102842952 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 38)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10166535 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10184597 | 0.86[YRI][hapmap] |
| rs10198860 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1024791 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs11123913 | 0.86[GIH][hapmap] |
| rs1117797 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12467251 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs12468673 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12474373 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs13416449 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17026825 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2080311 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2241130 | 0.92[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.88[TSI][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2287041 | 0.81[CEU][hapmap];0.85[GIH][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2302612 | 0.81[GIH][hapmap] |
| rs2302620 | 0.92[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.89[MKK][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3213734 | 0.92[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs34188221 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs3732131 | 0.81[YRI][hapmap] |
| rs3755284 | 0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs3755285 | 0.86[GIH][hapmap] |
| rs3755286 | 0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs3755287 | 0.92[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];1.00[LWK][hapmap];0.98[MKK][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3771181 | 0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs3771182 | 0.81[CEU][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs3771186 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3771188 | 0.92[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.96[LWK][hapmap];1.00[MKK][hapmap];0.83[TSI][hapmap];0.91[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs3821206 | 0.81[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6731042 | 0.81[CEU][hapmap];0.95[GIH][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs6758443 | 0.90[GIH][hapmap] |
| rs7421586 | 0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7560478 | 0.92[ASW][hapmap];0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[GIH][hapmap];0.86[MKK][hapmap];0.83[TSI][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs7572853 | 0.84[AMR][1000 genomes] |
| rs7572871 | 0.90[AFR][1000 genomes];0.84[AMR][1000 genomes] |
| rs7583215 | 0.81[AMR][1000 genomes] |
| rs7599472 | 0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs951192 | 0.82[YRI][hapmap] |
| rs955754 | 0.90[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1R1 | Distal transcriptional regulation |
| IL1RL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014