SNP Report
Name | rs11123913   dbSNP |
---|---|
Location | chr:2,102825479 |
Allele | T/C |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10166535 | 0.82[JPT][hapmap] |
rs1024791 | 0.82[JPT][hapmap] |
rs11123912 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1117797 | 0.88[JPT][hapmap] |
rs17026825 | 0.82[JPT][hapmap] |
rs2080311 | 0.88[JPT][hapmap] |
rs2241130 | 0.91[GIH][hapmap];0.81[JPT][hapmap] |
rs2287041 | 0.88[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap] |
rs2302612 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes] |
rs2302620 | 0.91[GIH][hapmap] |
rs3213734 | 0.91[GIH][hapmap];0.88[JPT][hapmap] |
rs3755284 | 0.88[CHB][hapmap] |
rs3755285 | 0.95[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.82[JPT][hapmap];0.96[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs3755287 | 0.91[GIH][hapmap];0.88[JPT][hapmap] |
rs3771182 | 1.00[CHB][hapmap];0.82[JPT][hapmap];0.88[ASN][1000 genomes] |
rs3771184 | 0.86[GIH][hapmap] |
rs3771186 | 0.88[JPT][hapmap] |
rs3771188 | 0.91[GIH][hapmap];0.88[JPT][hapmap] |
rs3821206 | 0.82[JPT][hapmap] |
rs6709635 | 1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
rs6731042 | 1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes] |
rs6742931 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6754556 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
rs6758443 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes] |
rs7560478 | 0.91[GIH][hapmap];0.82[JPT][hapmap] |
rs7572853 | 0.88[CHB][hapmap] |
rs7572871 | 0.86[CHB][hapmap] |
rs7583215 | 0.88[CHB][hapmap];0.92[CHD][hapmap] |
rs955754 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
IL1R2 | Distal transcriptional regulation |
IL1RL2 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014