SNP Report
Basic Infomation
| Name | rs6742931 dbSNP |
|---|---|
| Location | chr:2,102851243 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11123912 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11123913 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2287041 | 0.86[ASN][1000 genomes] |
| rs2302612 | 1.00[ASN][1000 genomes] |
| rs3755284 | 0.87[ASN][1000 genomes] |
| rs3755285 | 0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs3771182 | 0.97[ASN][1000 genomes] |
| rs6709635 | 0.80[AFR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6731042 | 0.98[ASN][1000 genomes] |
| rs6754556 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6758443 | 0.97[ASN][1000 genomes] |
| rs7572853 | 0.86[ASN][1000 genomes] |
| rs7572871 | 0.86[ASN][1000 genomes] |
| rs7583215 | 0.85[ASN][1000 genomes] |
| rs955754 | 0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014