SNP Report
Basic Infomation
| Name | rs6754556 dbSNP |
|---|---|
| Location | chr:2,102850924 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10167431 | 0.81[AFR][1000 genomes] |
| rs11123912 | 1.00[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs11123913 | 1.00[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1117797 | 0.80[JPT][hapmap] |
| rs2080311 | 0.80[JPT][hapmap] |
| rs2287041 | 0.92[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs2302612 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3213734 | 0.86[JPT][hapmap] |
| rs3755284 | 0.93[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs3755285 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs3755287 | 0.86[JPT][hapmap] |
| rs3771182 | 1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes] |
| rs3771186 | 0.80[JPT][hapmap] |
| rs3771188 | 0.86[JPT][hapmap] |
| rs6709635 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6731042 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs6742931 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6758443 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7572853 | 0.93[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs7572871 | 0.92[CHB][hapmap];0.86[ASN][1000 genomes] |
| rs7583215 | 0.92[CHB][hapmap];0.85[ASN][1000 genomes] |
| rs955754 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| IL1RL2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014