SNP Report

Basic Infomation

Name	rs2287041 dbSNP
Location	chr:2,102852866
Allele	G/T

LD-proxy of rSNPs(r²>0.8) (count: 40)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10166535	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10198860	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1024791	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11123912	0.88[CHB][hapmap]
rs11123913	0.88[CHB][hapmap];0.92[CHD][hapmap];0.81[GIH][hapmap]
rs1117797	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12467251	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12468673	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12474373	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13416449	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17026825	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2080311	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2241130	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2302612	0.88[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.86[ASN][1000 genomes]
rs2302620	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3213734	0.90[CEU][hapmap];0.90[GIH][hapmap];0.91[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34188221	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3732131	0.95[MEX][hapmap]
rs3755284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3755285	0.88[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.83[ASN][1000 genomes]
rs3755286	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3755287	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3771181	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3771182	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3771184	0.81[CEU][hapmap];0.85[GIH][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3771186	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs3771188	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs3821206	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6709635	0.87[CHB][hapmap];0.85[ASN][1000 genomes]
rs6731042	0.86[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];0.90[GIH][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6742931	0.86[ASN][1000 genomes]
rs6754556	0.92[CHB][hapmap];0.86[ASN][1000 genomes]
rs6758443	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.84[ASN][1000 genomes]
rs7421586	0.83[AMR][1000 genomes]
rs7560478	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7572853	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7572871	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7583215	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.89[TSI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7599472	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs955754	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1RL2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)