SNP Report

Basic Infomation

Name	rs955754 dbSNP
Location	chr:2,102849081
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 33)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10166535	0.81[JPT][hapmap]
rs10167431	0.86[LWK][hapmap];0.96[YRI][hapmap]
rs10198860	0.81[JPT][hapmap]
rs1024791	0.81[JPT][hapmap]
rs11123912	1.00[CHB][hapmap];0.83[JPT][hapmap];0.88[ASN][1000 genomes]
rs11123913	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.84[MEX][hapmap];0.87[ASN][1000 genomes]
rs1117797	0.87[JPT][hapmap]
rs12468673	0.81[JPT][hapmap]
rs13416449	0.81[JPT][hapmap]
rs17026825	0.81[JPT][hapmap]
rs2080311	0.87[JPT][hapmap]
rs2241130	0.95[GIH][hapmap];0.80[JPT][hapmap]
rs2287041	0.88[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];0.85[ASN][1000 genomes]
rs2302612	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2302620	0.95[GIH][hapmap];0.81[JPT][hapmap]
rs3213734	0.95[GIH][hapmap];0.87[JPT][hapmap]
rs3755284	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs3755285	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.87[LWK][hapmap];0.88[MEX][hapmap];0.92[MKK][hapmap];0.98[ASN][1000 genomes]
rs3755287	0.95[GIH][hapmap];0.87[JPT][hapmap]
rs3771182	1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs3771184	0.90[GIH][hapmap]
rs3771186	0.87[JPT][hapmap]
rs3771188	0.95[GIH][hapmap];0.87[JPT][hapmap]
rs3821206	0.81[JPT][hapmap]
rs6709635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6731042	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6742931	0.98[ASN][1000 genomes]
rs6754556	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6758443	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7560478	0.95[GIH][hapmap];0.81[JPT][hapmap]
rs7572853	0.88[CHB][hapmap];0.84[ASN][1000 genomes]
rs7572871	0.86[CHB][hapmap];0.85[ASN][1000 genomes]
rs7583215	0.88[CHB][hapmap];0.92[CHD][hapmap];0.83[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
IL1RL2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
IL1RL1	SCAN
IL18R1	SCAN