SNP Report
Basic Infomation
| Name | rs7563881 dbSNP |
|---|---|
| Location | chr:2,65385592 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 76)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10173422 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10173678 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10185243 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs10187798 | 0.84[JPT][hapmap] |
| rs1019303 | 0.84[JPT][hapmap] |
| rs1019305 | 0.84[JPT][hapmap] |
| rs10195328 | 0.84[JPT][hapmap] |
| rs10195785 | 0.88[ASN][1000 genomes] |
| rs10205598 | 0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10519011 | 0.84[JPT][hapmap] |
| rs11126028 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[LWK][hapmap];0.84[MKK][hapmap] |
| rs11126030 | 0.84[JPT][hapmap] |
| rs11126031 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs11678917 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11684110 | 0.89[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11888531 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs11893423 | 0.83[AFR][1000 genomes] |
| rs11896168 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1228 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap] |
| rs12611491 | 0.84[JPT][hapmap] |
| rs12617149 | 0.84[JPT][hapmap] |
| rs12621608 | 0.80[CHB][hapmap];0.84[JPT][hapmap] |
| rs12713532 | 0.85[CHB][hapmap];0.89[JPT][hapmap] |
| rs12713533 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12713534 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1420183 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[LWK][hapmap];0.81[TSI][hapmap] |
| rs1420184 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs1420185 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs17040050 | 0.84[CHB][hapmap];0.89[JPT][hapmap] |
| rs17040051 | 0.84[JPT][hapmap] |
| rs1894875 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2052261 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap] |
| rs2241158 | 0.84[JPT][hapmap] |
| rs2241160 | 0.80[CHB][hapmap];0.84[JPT][hapmap] |
| rs2241161 | 0.80[CHB][hapmap];0.84[JPT][hapmap] |
| rs2249105 | 0.80[CHB][hapmap];0.84[JPT][hapmap] |
| rs2252867 | 0.84[JPT][hapmap] |
| rs2302631 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[LWK][hapmap] |
| rs2422437 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2422438 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2422441 | 0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2723085 | 0.80[CHB][hapmap];0.84[JPT][hapmap] |
| rs2723087 | 0.80[CHB][hapmap];0.84[JPT][hapmap] |
| rs2723091 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap] |
| rs3732096 | 1.00[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.95[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs3732098 | 0.84[JPT][hapmap] |
| rs3771105 | 0.84[JPT][hapmap] |
| rs4671118 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4671119 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4671120 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs4671638 | 0.94[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs4671640 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs6546123 | 0.85[CHB][hapmap];0.83[JPT][hapmap] |
| rs6546125 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs6546128 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.95[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6546129 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6546130 | 0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs6546131 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6705891 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6715178 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6725335 | 0.84[JPT][hapmap] |
| rs6736728 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.85[LWK][hapmap];0.81[TSI][hapmap] |
| rs6741255 | 0.84[CHB][hapmap];0.84[JPT][hapmap] |
| rs6748462 | 0.89[CEU][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs6750146 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6751786 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs6757520 | 0.84[JPT][hapmap] |
| rs6758819 | 0.88[ASN][1000 genomes] |
| rs7565943 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7585500 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs7597073 | 0.84[JPT][hapmap] |
| rs7607025 | 0.84[EUR][1000 genomes] |
| rs7607039 | 0.84[EUR][1000 genomes] |
| rs9784118 | 0.83[JPT][hapmap] |
| rs984748 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9989843 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000200654 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014