SNP Report
Basic Infomation
| Name | rs2723091 dbSNP |
|---|---|
| Location | chr:2,65302017 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 93)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1009358 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs1009360 | 0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs10173422 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap] |
| rs10173678 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap] |
| rs10185243 | 1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs10187798 | 0.87[YRI][hapmap] |
| rs1019303 | 0.93[YRI][hapmap] |
| rs1019305 | 0.93[YRI][hapmap] |
| rs10195328 | 0.87[YRI][hapmap] |
| rs1050676 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1055903 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs11126028 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11126029 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs11126031 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
| rs11678917 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs11684110 | 0.84[JPT][hapmap] |
| rs11885480 | 0.87[YRI][hapmap] |
| rs11888531 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs11893423 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1228 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12465024 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12472718 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12621608 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs12713532 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12713533 | 0.84[JPT][hapmap];0.86[TSI][hapmap] |
| rs12990465 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs13005414 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs13006381 | 0.90[ASN][1000 genomes] |
| rs13421845 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1420183 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1420184 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1420185 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17040050 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17849707 | 0.97[CHD][hapmap];0.96[ASN][1000 genomes] |
| rs2052261 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2080385 | 0.92[ASN][1000 genomes] |
| rs2241160 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2241161 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2249105 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2252867 | 0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2302631 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2302647 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
| rs2422436 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2422437 | 0.90[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.84[ASN][1000 genomes] |
| rs2422438 | 0.81[ASN][1000 genomes] |
| rs2422441 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs2540945 | 0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2540948 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2540949 | 0.88[ASN][1000 genomes] |
| rs2540950 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2540951 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2723062 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2723063 | 0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2723064 | 0.86[ASN][1000 genomes] |
| rs2723065 | 0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2723066 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2723082 | 0.91[AMR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2723083 | 0.91[AMR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2723085 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2723086 | 0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2723087 | 0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2901749 | 0.92[ASN][1000 genomes] |
| rs3732096 | 0.83[CHD][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes] |
| rs4671116 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4671117 | 0.91[ASN][1000 genomes] |
| rs4671120 | 0.82[JPT][hapmap] |
| rs4671638 | 0.81[TSI][hapmap] |
| rs60136636 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6546123 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6546124 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6546125 | 0.87[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs6546128 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap] |
| rs6546131 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
| rs6713746 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6725335 | 0.85[YRI][hapmap] |
| rs6728523 | 0.88[ASN][1000 genomes] |
| rs6730986 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs6736728 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6736982 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6741255 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6748462 | 0.83[JPT][hapmap] |
| rs6756585 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs6757520 | 0.87[YRI][hapmap] |
| rs71424153 | 0.86[ASN][1000 genomes] |
| rs74181299 | 0.87[ASN][1000 genomes] |
| rs7559813 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs7563866 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs7563881 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap] |
| rs7579489 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7590690 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9784118 | 0.86[YRI][hapmap] |
| rs9797989 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs984748 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CEP68 | Proximal transcriptional regulation |
| CEP68 | Distal transcriptional regulation |
| ACTR2 | Distal transcriptional regulation |
| RAB1A | Distal transcriptional regulation |
| CEP68 | RNA binding protein mediated regulation |
| RAB1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014