SNP Report
Name | rs2723091   dbSNP |
---|---|
Location | chr:2,65302017 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs1009358 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs1009360 | 0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs10173422 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap] |
rs10173678 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap] |
rs10185243 | 1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes] |
rs10187798 | 0.87[YRI][hapmap] |
rs1019303 | 0.93[YRI][hapmap] |
rs1019305 | 0.93[YRI][hapmap] |
rs10195328 | 0.87[YRI][hapmap] |
rs1050676 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1055903 | 0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11126028 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11126029 | 0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11126031 | 0.84[CHB][hapmap];0.83[JPT][hapmap] |
rs11678917 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
rs11684110 | 0.84[JPT][hapmap] |
rs11885480 | 0.87[YRI][hapmap] |
rs11888531 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
rs11893423 | 0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1228 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs12465024 | 0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12472718 | 0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs12621608 | 0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs12713532 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs12713533 | 0.84[JPT][hapmap];0.86[TSI][hapmap] |
rs12990465 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes] |
rs13005414 | 0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs13006381 | 0.90[ASN][1000 genomes] |
rs13421845 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs1420183 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs1420184 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1420185 | 0.90[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs17040050 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs17849707 | 0.97[CHD][hapmap];0.96[ASN][1000 genomes] |
rs2052261 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs2080385 | 0.92[ASN][1000 genomes] |
rs2241160 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs2241161 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes] |
rs2249105 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2252867 | 0.90[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[ASN][1000 genomes] |
rs2302631 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs2302647 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes] |
rs2422436 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2422437 | 0.90[CHB][hapmap];0.89[CHD][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.84[ASN][1000 genomes] |
rs2422438 | 0.81[ASN][1000 genomes] |
rs2422441 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
rs2540945 | 0.83[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2540948 | 0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
rs2540949 | 0.88[ASN][1000 genomes] |
rs2540950 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2540951 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2723062 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2723063 | 0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2723064 | 0.86[ASN][1000 genomes] |
rs2723065 | 0.83[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2723066 | 0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs2723082 | 0.91[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2723083 | 0.91[AMR][1000 genomes];0.89[ASN][1000 genomes] |
rs2723085 | 0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2723086 | 0.83[CEU][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2723087 | 0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2901749 | 0.92[ASN][1000 genomes] |
rs3732096 | 0.83[CHD][hapmap];0.89[JPT][hapmap];0.86[TSI][hapmap];0.93[YRI][hapmap];0.83[ASN][1000 genomes] |
rs4671116 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs4671117 | 0.91[ASN][1000 genomes] |
rs4671120 | 0.82[JPT][hapmap] |
rs4671638 | 0.81[TSI][hapmap] |
rs60136636 | 0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6546123 | 0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6546124 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6546125 | 0.87[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs6546128 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.86[TSI][hapmap] |
rs6546131 | 0.85[CHB][hapmap];0.84[JPT][hapmap] |
rs6713746 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs6725335 | 0.85[YRI][hapmap] |
rs6728523 | 0.88[ASN][1000 genomes] |
rs6730986 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6736728 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs6736982 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6741255 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs6748462 | 0.83[JPT][hapmap] |
rs6756585 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6757520 | 0.87[YRI][hapmap] |
rs71424153 | 0.86[ASN][1000 genomes] |
rs74181299 | 0.87[ASN][1000 genomes] |
rs7559813 | 0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes] |
rs7563866 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7563881 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.81[TSI][hapmap] |
rs7579489 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs7590690 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9784118 | 0.86[YRI][hapmap] |
rs9797989 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs984748 | 0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap] |
Symbol | Regulation type |
---|---|
CEP68 | Proximal transcriptional regulation |
CEP68 | Distal transcriptional regulation |
ACTR2 | Distal transcriptional regulation |
RAB1A | Distal transcriptional regulation |
CEP68 | RNA binding protein mediated regulation |
RAB1A | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014