SNP Report

Basic Infomation

Name	rs1009358 dbSNP
Location	chr:2,65276452
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 71)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1009360	1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.99[ASN][1000 genomes]
rs10185243	0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs1050676	0.84[ASN][1000 genomes]
rs1055903	0.84[ASN][1000 genomes]
rs11126028	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs11126029	0.85[ASN][1000 genomes]
rs11893423	0.82[ASN][1000 genomes]
rs1228	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs12465024	0.86[ASN][1000 genomes]
rs12472718	0.87[ASN][1000 genomes]
rs12621608	0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs12713532	0.85[CHB][hapmap];0.89[JPT][hapmap];0.83[ASN][1000 genomes]
rs12990465	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs13005414	0.86[ASN][1000 genomes]
rs13006381	0.82[ASN][1000 genomes]
rs13421845	0.86[ASN][1000 genomes]
rs1420183	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1420184	0.85[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs1420185	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.87[MEX][hapmap];0.86[ASN][1000 genomes]
rs17040050	0.84[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs17849707	0.89[CHD][hapmap];0.89[ASN][1000 genomes]
rs2052261	0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2080385	0.92[ASN][1000 genomes]
rs2241160	0.90[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.91[ASN][1000 genomes]
rs2241161	0.90[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs2249105	0.82[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2252867	0.85[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2302631	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2302647	0.94[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.98[ASN][1000 genomes]
rs2422436	0.84[ASN][1000 genomes]
rs2422437	0.82[CHD][hapmap]
rs2540945	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2540948	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2540949	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2540950	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.96[YRI][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2540951	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723062	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723063	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2723064	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723066	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723067	0.87[ASN][1000 genomes]
rs2723082	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2723083	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2723085	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs2723086	0.89[ASN][1000 genomes]
rs2723087	0.90[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs2723091	0.85[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2901749	0.91[ASN][1000 genomes]
rs3732096	0.80[JPT][hapmap]
rs4671116	0.85[ASN][1000 genomes]
rs4671117	0.82[ASN][1000 genomes]
rs60136636	0.86[ASN][1000 genomes]
rs6546123	0.85[CHB][hapmap];0.89[JPT][hapmap];0.84[ASN][1000 genomes]
rs6546124	0.82[ASN][1000 genomes]
rs6546125	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6713746	0.86[ASN][1000 genomes]
rs6728523	0.98[ASN][1000 genomes]
rs6730986	0.83[ASN][1000 genomes]
rs6736728	0.85[CHB][hapmap];0.89[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs6736982	0.84[ASN][1000 genomes]
rs6741255	0.84[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs6756585	0.85[ASN][1000 genomes]
rs71424153	1.00[ASN][1000 genomes]
rs74181299	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7559813	0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[ASN][1000 genomes]
rs7562809	0.80[JPT][hapmap]
rs7563866	0.83[ASN][1000 genomes]
rs7579489	0.85[ASN][1000 genomes]
rs7590690	0.86[ASN][1000 genomes]
rs9797989	0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
CEP68	Distal transcriptional regulation
ENSG00000232613	Distal transcriptional regulation
SLC1A4	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 5)

eQTL related gene	Source
CEP68	seeQTL
CEP68	Pritchard
SLC1A4	SCAN
APLF	SCAN
KIAA1841	SCAN