SNP Report

Basic Infomation

Name	rs74181299 dbSNP
Location	chr:2,65283972
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 68)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1009358	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1009360	0.96[ASN][1000 genomes]
rs10185243	0.84[ASN][1000 genomes]
rs1050676	0.84[ASN][1000 genomes]
rs1055903	0.84[ASN][1000 genomes]
rs11126028	0.85[ASN][1000 genomes]
rs11126029	0.85[ASN][1000 genomes]
rs11893423	0.82[ASN][1000 genomes]
rs1228	0.85[ASN][1000 genomes]
rs12465024	0.86[ASN][1000 genomes]
rs12472718	0.87[ASN][1000 genomes]
rs12621608	0.87[ASN][1000 genomes]
rs12713532	0.83[ASN][1000 genomes]
rs12990465	0.98[ASN][1000 genomes]
rs13005414	0.86[ASN][1000 genomes]
rs13006381	0.82[ASN][1000 genomes]
rs13421845	0.86[ASN][1000 genomes]
rs1420183	0.86[ASN][1000 genomes]
rs1420184	0.85[ASN][1000 genomes]
rs1420185	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17040050	0.86[ASN][1000 genomes]
rs17849707	0.89[ASN][1000 genomes]
rs2052261	0.84[ASN][1000 genomes]
rs2080385	0.92[ASN][1000 genomes]
rs2241160	0.91[ASN][1000 genomes]
rs2241161	0.91[ASN][1000 genomes]
rs2249105	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2252867	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2302631	0.86[ASN][1000 genomes]
rs2302647	0.98[ASN][1000 genomes]
rs2422436	0.84[ASN][1000 genomes]
rs2540945	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2540948	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2540949	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2540950	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2540951	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2723062	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2723063	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2723064	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2723065	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2723066	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2723067	0.84[ASN][1000 genomes]
rs2723082	0.89[ASN][1000 genomes]
rs2723083	0.88[ASN][1000 genomes]
rs2723085	0.87[ASN][1000 genomes]
rs2723086	0.89[ASN][1000 genomes]
rs2723087	0.89[ASN][1000 genomes]
rs2723091	0.87[ASN][1000 genomes]
rs2901749	0.91[ASN][1000 genomes]
rs4671116	0.85[ASN][1000 genomes]
rs4671117	0.82[ASN][1000 genomes]
rs60136636	0.86[ASN][1000 genomes]
rs6546123	0.84[ASN][1000 genomes]
rs6546124	0.82[ASN][1000 genomes]
rs6546125	0.86[ASN][1000 genomes]
rs6713746	0.86[ASN][1000 genomes]
rs6728523	0.98[ASN][1000 genomes]
rs6730986	0.83[ASN][1000 genomes]
rs6736728	0.86[ASN][1000 genomes]
rs6736982	0.84[ASN][1000 genomes]
rs6741255	0.84[ASN][1000 genomes]
rs6756585	0.85[ASN][1000 genomes]
rs71424153	0.97[ASN][1000 genomes]
rs7559813	0.97[ASN][1000 genomes]
rs7563866	0.83[ASN][1000 genomes]
rs7579489	0.85[ASN][1000 genomes]
rs7590690	0.86[ASN][1000 genomes]
rs9797989	0.85[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ENSG00000232613	Proximal transcriptional regulation
SLC1A4	Distal transcriptional regulation
ACTR2	Distal transcriptional regulation
ENSG00000232613	Distal transcriptional regulation
ENSG00000260101	Distal transcriptional regulation
AFTPH	Distal transcriptional regulation
RAB1A	Distal transcriptional regulation
CEP68	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)