SNP Report
Basic Infomation
| Name | rs11885480 dbSNP |
|---|---|
| Location | chr:2,65336170 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 45)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10165691 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10187798 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1019303 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1019305 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10195328 | 0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs10496122 | 0.92[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs10519011 | 1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs11126030 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs12172885 | 0.97[ASN][1000 genomes] |
| rs1228 | 0.87[YRI][hapmap] |
| rs12472234 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12611491 | 0.85[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes] |
| rs12617149 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes] |
| rs12619806 | 0.97[ASN][1000 genomes] |
| rs12623206 | 0.98[ASN][1000 genomes] |
| rs12713529 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs13012648 | 0.92[ASN][1000 genomes] |
| rs1558659 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1558660 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17040051 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs1961243 | 0.82[ASN][1000 genomes] |
| rs2052261 | 0.93[YRI][hapmap];0.82[AFR][1000 genomes] |
| rs2227268 | 0.94[ASN][1000 genomes] |
| rs2241140 | 1.00[CHB][hapmap];0.96[CHD][hapmap];0.88[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2241158 | 1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[JPT][hapmap];0.92[ASN][1000 genomes] |
| rs2422437 | 0.82[JPT][hapmap];0.93[YRI][hapmap] |
| rs2723091 | 0.87[YRI][hapmap] |
| rs34374525 | 0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs3732096 | 0.82[JPT][hapmap];0.93[YRI][hapmap] |
| rs3732098 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs3771105 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs4671115 | 0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4671118 | 0.80[AFR][1000 genomes] |
| rs4671120 | 0.81[JPT][hapmap] |
| rs55952639 | 0.90[ASN][1000 genomes] |
| rs61758848 | 0.95[ASN][1000 genomes] |
| rs6725335 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6730986 | 0.82[AFR][1000 genomes] |
| rs6741843 | 0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs6757520 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7562809 | 0.82[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs7595521 | 0.96[ASN][1000 genomes] |
| rs7597073 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs950736 | 0.82[ASN][1000 genomes] |
| rs9784118 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAB1A | Proximal transcriptional regulation |
| RAB1A | Distal transcriptional regulation |
| RAB1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014