SNP Report

Basic Infomation

Name	rs1558659 dbSNP
Location	chr:2,65342700
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 42)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10165691	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10187798	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1019303	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1019305	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10195328	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10496122	0.92[ASN][1000 genomes]
rs10519011	0.92[ASN][1000 genomes]
rs11126030	0.99[ASN][1000 genomes]
rs11885480	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12172885	0.97[ASN][1000 genomes]
rs1228	0.86[AFR][1000 genomes]
rs12472234	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12611491	0.90[ASN][1000 genomes]
rs12617149	0.99[ASN][1000 genomes]
rs12619806	0.97[ASN][1000 genomes]
rs12623206	0.98[ASN][1000 genomes]
rs12713529	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13012648	0.92[ASN][1000 genomes]
rs1558660	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17040051	0.98[ASN][1000 genomes]
rs1961243	0.82[ASN][1000 genomes]
rs2052261	0.91[AFR][1000 genomes]
rs2227268	0.94[ASN][1000 genomes]
rs2241140	0.92[ASN][1000 genomes]
rs2241158	0.92[ASN][1000 genomes]
rs2422437	0.91[AFR][1000 genomes]
rs34374525	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3732096	0.84[AFR][1000 genomes]
rs3732098	0.93[ASN][1000 genomes]
rs3771105	0.98[ASN][1000 genomes]
rs4671115	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55952639	0.90[ASN][1000 genomes]
rs61758848	0.95[ASN][1000 genomes]
rs6725335	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6730986	0.91[AFR][1000 genomes]
rs6741843	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6757520	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7562809	0.80[ASN][1000 genomes]
rs7595521	0.96[ASN][1000 genomes]
rs7597073	0.91[ASN][1000 genomes]
rs950736	0.82[ASN][1000 genomes]
rs9784118	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAB1A	Distal transcriptional regulation
RAB1A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)