SNP Report

Basic Infomation

Name	rs2422441 dbSNP
Location	chr:2,65370766
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 73)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10173422	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10173678	0.83[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10185243	0.85[CEU][hapmap];0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[MKK][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10187798	0.84[JPT][hapmap]
rs1019303	0.84[JPT][hapmap]
rs1019305	0.84[JPT][hapmap]
rs10195328	0.84[JPT][hapmap]
rs10195785	0.84[ASN][1000 genomes]
rs10205598	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10519011	0.84[JPT][hapmap]
rs11126028	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs11126030	0.84[JPT][hapmap]
rs11126031	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11678917	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11684110	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11888531	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11896168	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1228	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs12611491	0.84[JPT][hapmap]
rs12617149	0.84[JPT][hapmap]
rs12621608	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs12713532	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs12713533	0.89[ASW][hapmap];0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12713534	0.95[ASN][1000 genomes]
rs1420183	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1420184	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs1420185	0.85[CHB][hapmap];0.84[JPT][hapmap];0.84[TSI][hapmap]
rs17040050	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs17040051	0.84[JPT][hapmap]
rs1894875	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2052261	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2241158	0.84[JPT][hapmap]
rs2241160	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2241161	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2249105	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2252867	0.84[JPT][hapmap]
rs2302631	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs2422437	0.89[CEU][hapmap];0.85[CHB][hapmap];0.86[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2422438	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2723085	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2723087	0.80[CHB][hapmap];0.84[JPT][hapmap]
rs2723091	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs3732096	0.89[CEU][hapmap];0.81[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];0.82[MEX][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3732098	0.84[JPT][hapmap]
rs3771105	0.84[JPT][hapmap]
rs4671118	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671119	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671120	0.88[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4671638	0.83[CEU][hapmap];0.90[GIH][hapmap]
rs4671640	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546123	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs6546125	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs6546128	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6546129	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6546130	0.87[ASN][1000 genomes]
rs6546131	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6705891	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6715178	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6725335	0.84[JPT][hapmap]
rs6736728	0.85[CHB][hapmap];0.84[JPT][hapmap]
rs6741255	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs6748462	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6750146	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6751786	0.87[ASN][1000 genomes]
rs6757520	0.84[JPT][hapmap]
rs6758819	0.84[ASN][1000 genomes]
rs7563881	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7565943	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7585500	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7597073	0.84[JPT][hapmap]
rs9784118	0.83[JPT][hapmap]
rs984748	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9989843	0.84[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ACTR2	Distal transcriptional regulation
RAB1A	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 2)

eQTL related gene	Source
CEP68	seeQTL
CEP68	SCAN