SNP Report

Basic Infomation

Name	rs4671640 dbSNP
Location	chr:2,65360669
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 59)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10173422	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10173678	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10185243	0.82[ASN][1000 genomes]
rs10195785	0.80[ASN][1000 genomes]
rs10205598	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11126028	0.81[ASN][1000 genomes]
rs11126029	0.81[ASN][1000 genomes]
rs11678917	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11684110	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11888531	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11893423	0.89[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs11896168	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12465024	0.81[ASN][1000 genomes]
rs12472718	0.80[ASN][1000 genomes]
rs12713532	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12713533	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12713534	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13005414	0.81[ASN][1000 genomes]
rs13421845	0.81[ASN][1000 genomes]
rs17040050	0.81[ASN][1000 genomes]
rs1894875	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2052261	0.83[ASN][1000 genomes]
rs2302631	0.81[ASN][1000 genomes]
rs2422436	0.81[ASN][1000 genomes]
rs2422437	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2422438	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2422441	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3732096	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4671116	0.81[ASN][1000 genomes]
rs4671117	0.82[ASN][1000 genomes]
rs4671118	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671119	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4671120	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4671638	0.86[EUR][1000 genomes]
rs60136636	0.81[ASN][1000 genomes]
rs6546128	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6546129	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6546130	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6546131	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6705891	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6713746	0.81[ASN][1000 genomes]
rs6715178	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6730986	0.82[ASN][1000 genomes]
rs6736982	0.80[ASN][1000 genomes]
rs6748462	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6750146	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6751786	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6756585	0.81[ASN][1000 genomes]
rs6758819	0.80[ASN][1000 genomes]
rs7563881	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7565943	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7579489	0.80[ASN][1000 genomes]
rs7585500	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7590690	0.81[ASN][1000 genomes]
rs7607025	0.89[EUR][1000 genomes]
rs7607039	0.89[EUR][1000 genomes]
rs9797989	0.81[ASN][1000 genomes]
rs984748	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9989843	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAB1A	Proximal transcriptional regulation
RAB1A	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)