SNP Report
Name | rs4671640   dbSNP |
---|---|
Location | chr:2,65360669 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10173422 | 0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10173678 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs10185243 | 0.82[ASN][1000 genomes] |
rs10195785 | 0.80[ASN][1000 genomes] |
rs10205598 | 0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11126028 | 0.81[ASN][1000 genomes] |
rs11126029 | 0.81[ASN][1000 genomes] |
rs11678917 | 0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs11684110 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11888531 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs11893423 | 0.89[AFR][1000 genomes];0.81[ASN][1000 genomes] |
rs11896168 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs12465024 | 0.81[ASN][1000 genomes] |
rs12472718 | 0.80[ASN][1000 genomes] |
rs12713532 | 0.80[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs12713533 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12713534 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs13005414 | 0.81[ASN][1000 genomes] |
rs13421845 | 0.81[ASN][1000 genomes] |
rs17040050 | 0.81[ASN][1000 genomes] |
rs1894875 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2052261 | 0.83[ASN][1000 genomes] |
rs2302631 | 0.81[ASN][1000 genomes] |
rs2422436 | 0.81[ASN][1000 genomes] |
rs2422437 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2422438 | 0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes] |
rs2422441 | 0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs3732096 | 0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs4671116 | 0.81[ASN][1000 genomes] |
rs4671117 | 0.82[ASN][1000 genomes] |
rs4671118 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4671119 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4671120 | 0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4671638 | 0.86[EUR][1000 genomes] |
rs60136636 | 0.81[ASN][1000 genomes] |
rs6546128 | 0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6546129 | 0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6546130 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6546131 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6705891 | 0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs6713746 | 0.81[ASN][1000 genomes] |
rs6715178 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6730986 | 0.82[ASN][1000 genomes] |
rs6736982 | 0.80[ASN][1000 genomes] |
rs6748462 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6750146 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs6751786 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs6756585 | 0.81[ASN][1000 genomes] |
rs6758819 | 0.80[ASN][1000 genomes] |
rs7563881 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs7565943 | 0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs7579489 | 0.80[ASN][1000 genomes] |
rs7585500 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7590690 | 0.81[ASN][1000 genomes] |
rs7607025 | 0.89[EUR][1000 genomes] |
rs7607039 | 0.89[EUR][1000 genomes] |
rs9797989 | 0.81[ASN][1000 genomes] |
rs984748 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs9989843 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
RAB1A | Proximal transcriptional regulation |
RAB1A | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014