SNP Report
Basic Infomation
| Name | rs4671638 dbSNP |
|---|---|
| Location | chr:2,65312217 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 46)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10173422 | 0.94[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs10173678 | 0.94[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs10176281 | 0.98[ASN][1000 genomes] |
| rs1050675 | 0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs11126031 | 0.94[CEU][hapmap] |
| rs11678917 | 0.94[CEU][hapmap];0.83[EUR][1000 genomes] |
| rs11684110 | 0.83[CEU][hapmap] |
| rs11888531 | 0.94[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs1228 | 0.81[TSI][hapmap] |
| rs1229 | 0.96[ASN][1000 genomes] |
| rs12713533 | 0.94[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.86[EUR][1000 genomes] |
| rs13383649 | 0.98[ASN][1000 genomes] |
| rs13409078 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs1420183 | 0.81[TSI][hapmap] |
| rs1558658 | 0.98[ASN][1000 genomes] |
| rs17029863 | 0.83[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];0.98[ASN][1000 genomes] |
| rs1894874 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs2052261 | 0.81[TSI][hapmap] |
| rs2422437 | 0.94[CEU][hapmap];0.94[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs2422438 | 0.81[EUR][1000 genomes] |
| rs2422441 | 0.83[CEU][hapmap];0.90[GIH][hapmap] |
| rs2723091 | 0.81[TSI][hapmap] |
| rs28392943 | 0.98[ASN][1000 genomes] |
| rs3732096 | 0.94[CEU][hapmap];0.95[GIH][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs4671118 | 0.85[EUR][1000 genomes] |
| rs4671119 | 0.86[EUR][1000 genomes] |
| rs4671120 | 0.94[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs4671640 | 0.86[EUR][1000 genomes] |
| rs56725299 | 0.98[ASN][1000 genomes] |
| rs61758846 | 1.00[ASN][1000 genomes] |
| rs6546128 | 0.94[CEU][hapmap];0.90[GIH][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs6546129 | 0.84[EUR][1000 genomes] |
| rs6546131 | 0.94[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs6705891 | 0.84[EUR][1000 genomes] |
| rs6715178 | 0.84[EUR][1000 genomes] |
| rs6736728 | 0.81[TSI][hapmap] |
| rs6748462 | 0.83[CEU][hapmap] |
| rs6750146 | 0.81[EUR][1000 genomes] |
| rs7563881 | 0.94[CEU][hapmap];0.90[GIH][hapmap];0.90[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs7565943 | 0.84[EUR][1000 genomes] |
| rs7572857 | 0.92[CHB][hapmap];1.00[CHD][hapmap];0.96[ASN][1000 genomes] |
| rs7585500 | 0.84[EUR][1000 genomes] |
| rs7607025 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7607039 | 0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9784068 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs984748 | 0.94[CEU][hapmap];0.90[GIH][hapmap];0.92[TSI][hapmap];0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CEP68 | Proximal transcriptional regulation |
| RAB1A | Distal transcriptional regulation |
| CEP68 | RNA binding protein mediated regulation |
| RAB1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014