SNP Report

Basic Infomation

Name	rs13409078 dbSNP
Location	chr:2,65342606
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 34)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10173227	0.87[AFR][1000 genomes]
rs10176281	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1050675	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11885283	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11890484	0.84[YRI][hapmap]
rs11897778	0.87[YRI][hapmap]
rs11903681	0.87[YRI][hapmap]
rs1229	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13383649	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13389745	0.92[YRI][hapmap]
rs13400482	0.83[AFR][1000 genomes]
rs1558658	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029820	0.92[YRI][hapmap]
rs17029860	1.00[YRI][hapmap]
rs17029863	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17029951	0.92[YRI][hapmap]
rs17029975	0.84[YRI][hapmap]
rs1894874	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs268858	0.82[JPT][hapmap]
rs28377817	0.87[AFR][1000 genomes]
rs28392943	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4671638	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs56367631	0.82[AFR][1000 genomes]
rs56725299	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57171913	0.88[AFR][1000 genomes]
rs58996321	0.85[EUR][1000 genomes]
rs61758846	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61758850	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73936413	0.84[AFR][1000 genomes]
rs7572857	0.82[CHB][hapmap];0.94[ASN][1000 genomes]
rs7607025	0.98[ASN][1000 genomes]
rs7607039	0.94[ASN][1000 genomes]
rs883927	1.00[YRI][hapmap]
rs9784068	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
RAB1A	Distal transcriptional regulation
RAB1A	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)