SNP Report
Basic Infomation
| Name | rs17029860 dbSNP |
|---|---|
| Location | chr:2,65341221 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10189514 | 0.85[YRI][hapmap] |
| rs1055676 | 1.00[AMR][1000 genomes] |
| rs11884205 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11889769 | 1.00[AMR][1000 genomes] |
| rs11890484 | 0.81[YRI][hapmap] |
| rs11896065 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11897778 | 0.83[YRI][hapmap] |
| rs11903681 | 0.83[YRI][hapmap] |
| rs13389745 | 0.82[YRI][hapmap] |
| rs13409078 | 1.00[YRI][hapmap] |
| rs17029820 | 0.95[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17029863 | 0.81[YRI][hapmap] |
| rs17029951 | 0.89[YRI][hapmap] |
| rs1990646 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55784483 | 1.00[AMR][1000 genomes] |
| rs58141624 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58786272 | 1.00[AMR][1000 genomes] |
| rs60633467 | 1.00[AMR][1000 genomes] |
| rs73934902 | 1.00[AMR][1000 genomes] |
| rs73936404 | 1.00[AMR][1000 genomes] |
| rs73936410 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73936422 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73936426 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs883927 | 0.90[YRI][hapmap];0.84[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAB1A | Distal transcriptional regulation |
| RAB1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014