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rVarBase
SNP Report
Basic Infomation
Name
rs58786272  
dbSNP
Location
chr:2,65274659
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1055676
1.00[AMR][1000 genomes]
rs11884205
1.00[AMR][1000 genomes]
rs11889769
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11896065
1.00[AMR][1000 genomes]
rs17029820
1.00[AMR][1000 genomes]
rs17029860
1.00[AMR][1000 genomes]
rs1990646
1.00[AMR][1000 genomes]
rs55784483
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58141624
1.00[AMR][1000 genomes]
rs60633467
1.00[AMR][1000 genomes]
rs73934902
0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936404
0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73936410
1.00[AMR][1000 genomes]
rs73936422
1.00[AMR][1000 genomes]
rs73936426
1.00[AMR][1000 genomes]
rSNP related genes
Symbol
Regulation type
CEP68
Distal transcriptional regulation
SLC1A4
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)