SNP Report
Basic Infomation
| Name | rs11897778 dbSNP |
|---|---|
| Location | chr:2,65383350 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10189514 | 0.84[YRI][hapmap] |
| rs11885283 | 0.89[AFR][1000 genomes] |
| rs11890484 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11890772 | 0.90[AFR][1000 genomes] |
| rs11896135 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11896233 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11903681 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13389745 | 0.81[YRI][hapmap] |
| rs13409078 | 0.87[YRI][hapmap] |
| rs17029820 | 0.85[YRI][hapmap] |
| rs17029860 | 0.83[YRI][hapmap] |
| rs17029863 | 0.80[YRI][hapmap] |
| rs17029896 | 1.00[AMR][1000 genomes] |
| rs17029951 | 0.94[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17029975 | 0.86[YRI][hapmap] |
| rs57113398 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57810066 | 1.00[AMR][1000 genomes] |
| rs58992243 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59085177 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59476922 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6729150 | 1.00[AMR][1000 genomes] |
| rs73936418 | 1.00[AMR][1000 genomes] |
| rs73936428 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs883927 | 0.89[YRI][hapmap];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000200654 | Proximal transcriptional regulation |
| ENSG00000200654 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014