SNP Report
Basic Infomation
| Name | rs17029975 dbSNP |
|---|---|
| Location | chr:2,65379958 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10189514 | 0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10190204 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1050675 | 1.00[LWK][hapmap] |
| rs11890484 | 0.86[YRI][hapmap] |
| rs11897778 | 0.86[YRI][hapmap] |
| rs11903681 | 0.86[YRI][hapmap] |
| rs13389745 | 0.86[YRI][hapmap] |
| rs13398942 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs13409078 | 0.84[YRI][hapmap] |
| rs17029820 | 0.82[YRI][hapmap] |
| rs17029863 | 0.85[YRI][hapmap] |
| rs17029951 | 0.88[YRI][hapmap];0.81[AFR][1000 genomes] |
| rs59085177 | 0.81[AFR][1000 genomes] |
| rs6729150 | 0.88[AFR][1000 genomes] |
| rs73936428 | 0.81[AFR][1000 genomes] |
| rs883927 | 0.83[YRI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CEP68 | Distal transcriptional regulation |
| RAB1A | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| UPF3A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014