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rVarBase
SNP Report
Basic Infomation
Name
rs10189514  
dbSNP
Location
chr:2,65372750
Allele
T/G
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10190204
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11890484
0.82[YRI][hapmap]
rs11897778
0.84[YRI][hapmap]
rs11903681
0.85[YRI][hapmap]
rs13398942
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17029820
0.88[YRI][hapmap]
rs17029860
0.85[YRI][hapmap]
rs17029951
0.86[YRI][hapmap]
rs17029975
0.94[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs883927
0.81[YRI][hapmap]
rSNP related genes
Symbol
Regulation type
RAB1A
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)