SNP Report
Basic Infomation
| Name | rs17029896 dbSNP |
|---|---|
| Location | chr:2,65356032 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11890484 | 1.00[AMR][1000 genomes] |
| rs11896135 | 1.00[AMR][1000 genomes] |
| rs11896233 | 1.00[AMR][1000 genomes] |
| rs11897778 | 1.00[AMR][1000 genomes] |
| rs11903681 | 1.00[AMR][1000 genomes] |
| rs17029951 | 1.00[AMR][1000 genomes] |
| rs57113398 | 1.00[AMR][1000 genomes] |
| rs57810066 | 1.00[AMR][1000 genomes] |
| rs58992243 | 1.00[AMR][1000 genomes] |
| rs59085177 | 1.00[AMR][1000 genomes] |
| rs59476922 | 1.00[AMR][1000 genomes] |
| rs6729150 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73936418 | 1.00[AMR][1000 genomes] |
| rs73936428 | 1.00[AMR][1000 genomes] |
| rs883927 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000204929 | Distal transcriptional regulation |
| ACTR2 | Distal transcriptional regulation |
| SLC1A4 | Distal transcriptional regulation |
| PSMD4 | Distal transcriptional regulation |
| CEP68 | Distal transcriptional regulation |
| RAB1A | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014