SNP Report
Name | rs11896168   dbSNP |
---|---|
Location | chr:2,65382158 |
Allele | G/A |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10173422 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10173678 | 0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs10195785 | 0.81[ASN][1000 genomes] |
rs10205598 | 0.89[ASN][1000 genomes] |
rs11678917 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs11684110 | 0.84[ASN][1000 genomes] |
rs11888531 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs12713533 | 0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs12713534 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1894875 | 0.86[ASN][1000 genomes] |
rs2422437 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs2422438 | 0.85[EUR][1000 genomes] |
rs2422441 | 0.82[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs3732096 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs4671118 | 0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4671119 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs4671120 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs4671640 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs6546128 | 0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6546129 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6546130 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs6546131 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6705891 | 0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6715178 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs6750146 | 0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs6751786 | 0.86[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6758819 | 0.81[ASN][1000 genomes] |
rs7563881 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs7565943 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7585500 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs7607025 | 0.80[EUR][1000 genomes] |
rs7607039 | 0.80[EUR][1000 genomes] |
rs984748 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs9989843 | 0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
ENSG00000200654 | Proximal transcriptional regulation |
ENSG00000200654 | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014