SNP Report

Basic Infomation

Name	rs7223899 dbSNP
Location	chr:17,57732585
Allele	C/T

LD-proxy of rSNPs(r²>0.8) (count: 51)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10515171	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11079385	0.85[JPT][hapmap]
rs11079389	0.90[CHB][hapmap]
rs12600671	1.00[CHB][hapmap]
rs12601793	1.00[CHB][hapmap]
rs12601863	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12603541	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1292037	0.91[CHB][hapmap]
rs13137	0.91[CHB][hapmap]
rs1528493	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1534550	0.85[JPT][hapmap]
rs1554846	0.85[JPT][hapmap]
rs16943620	0.95[CHB][hapmap]
rs16943635	1.00[CHB][hapmap]
rs16943748	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16943773	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1874548	0.91[CHB][hapmap]
rs2014001	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2102507	0.91[CHB][hapmap]
rs2132715	0.91[CHB][hapmap]
rs2173119	0.91[CHB][hapmap]
rs2173120	0.91[CHB][hapmap]
rs2271303	0.89[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2271304	0.91[CHB][hapmap]
rs2272411	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2645467	0.91[CHB][hapmap]
rs2645486	0.91[CHB][hapmap]
rs2645487	0.86[CHB][hapmap]
rs2645489	0.90[CHB][hapmap]
rs2645492	0.91[CHB][hapmap]
rs2665403	0.91[CHB][hapmap]
rs28465103	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2877975	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3803861	1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3817158	1.00[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4968389	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs57592560	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60164173	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7207324	0.95[CHB][hapmap]
rs7208008	0.81[CHB][hapmap]
rs7212825	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7215180	0.91[CHB][hapmap]
rs7224631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7226149	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8069123	0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs907066	0.85[JPT][hapmap]
rs9899611	0.91[CHB][hapmap]
rs9901606	0.91[CHB][hapmap]
rs9903626	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9905730	0.85[JPT][hapmap]
rs9907923	0.91[CHB][hapmap]

rSNP related genes

Symbol	Regulation type
CLTC	Proximal transcriptional regulation
CLTC	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)