SNP Report
Basic Infomation
| Name | rs3803861 dbSNP |
|---|---|
| Location | chr:17,57696973 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 51)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10515171 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs11079385 | 0.81[JPT][hapmap] |
| rs11079389 | 0.86[CHB][hapmap];0.90[CHD][hapmap] |
| rs12600671 | 1.00[CHB][hapmap] |
| rs12601793 | 1.00[CHB][hapmap] |
| rs12601863 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs12603541 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1528493 | 0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1534550 | 0.81[JPT][hapmap] |
| rs1554846 | 0.85[JPT][hapmap] |
| rs16943620 | 0.95[CHB][hapmap] |
| rs16943635 | 1.00[CHB][hapmap] |
| rs16943748 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[LWK][hapmap];0.92[MKK][hapmap];0.92[YRI][hapmap];0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs16943773 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1874548 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs2014001 | 0.86[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2102507 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs2132715 | 0.87[CHB][hapmap] |
| rs2173119 | 0.87[CHB][hapmap] |
| rs2173120 | 0.87[CHB][hapmap] |
| rs2271303 | 0.91[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];0.92[MKK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2271304 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs2272411 | 1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.81[LWK][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2645467 | 0.87[CHB][hapmap];0.88[CHD][hapmap] |
| rs2645486 | 0.87[CHB][hapmap] |
| rs2645487 | 0.83[CHB][hapmap];0.90[CHD][hapmap] |
| rs2645489 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs2645492 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs2665403 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs28465103 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2877975 | 0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs3803862 | 0.82[ASN][1000 genomes] |
| rs3817158 | 0.83[CHB][hapmap];0.95[JPT][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs4968389 | 0.81[JPT][hapmap] |
| rs57592560 | 0.86[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs60164173 | 0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7207324 | 0.95[CHB][hapmap] |
| rs7208008 | 0.81[CHB][hapmap] |
| rs7212825 | 1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];0.95[JPT][hapmap];0.83[LWK][hapmap];0.90[MKK][hapmap];0.88[YRI][hapmap];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7215180 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs7223899 | 1.00[CHB][hapmap];0.89[JPT][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7224631 | 1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.91[LWK][hapmap];0.90[MKK][hapmap];0.92[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs7226149 | 0.88[EUR][1000 genomes] |
| rs8069123 | 0.81[JPT][hapmap] |
| rs907066 | 0.81[JPT][hapmap] |
| rs9652857 | 0.81[JPT][hapmap] |
| rs9899611 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs9901606 | 0.87[CHB][hapmap];0.90[CHD][hapmap] |
| rs9903626 | 0.91[CHB][hapmap];0.86[JPT][hapmap];0.88[YRI][hapmap];0.83[EUR][1000 genomes] |
| rs9905730 | 0.81[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs9907923 | 0.87[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CLTC | Proximal transcriptional regulation |
| CENPN | Distal transcriptional regulation |
| ENSG00000201699 | Distal transcriptional regulation |
| LRRC57 | Distal transcriptional regulation |
| HAUS2 | Distal transcriptional regulation |
| HNRNPD | Distal transcriptional regulation |
| ENSG00000202077 | Distal transcriptional regulation |
| ENSG00000265313 | Distal transcriptional regulation |
| DHX40 | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| PTRH2 | Distal transcriptional regulation |
| SKA2 | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| CLTC | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| DDIT4 | Distal transcriptional regulation |
| RPS24 | Distal transcriptional regulation |
| RPL41 | Distal transcriptional regulation |
| HLA-DMA | Distal transcriptional regulation |
| BRD2 | Distal transcriptional regulation |
| BRD2-IT1 | Distal transcriptional regulation |
| METTL2B | Distal transcriptional regulation |
| HILPDA | Distal transcriptional regulation |
| ENSG00000240758 | Distal transcriptional regulation |
| FAM102A | Distal transcriptional regulation |
| PAXIP1 | Distal transcriptional regulation |
| LAPTM4A | Distal transcriptional regulation |
| ENSG00000212195 | Distal transcriptional regulation |
| PRR11 | Distal transcriptional regulation |
| GDPD1 | Distal transcriptional regulation |
| TUBD1 | Distal transcriptional regulation |
| RPS6KB1 | Distal transcriptional regulation |
| HEATR6 | Distal transcriptional regulation |
| ENSG00000267416 | Distal transcriptional regulation |
| B3GAT3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014