SNP Report
Name | rs4968389   dbSNP |
---|---|
Location | chr:17,57728344 |
Allele | C/T |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs10515171 | 0.86[JPT][hapmap] |
rs10853013 | 0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs10853014 | 0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11079385 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11658001 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs11872004 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs12603541 | 0.86[JPT][hapmap] |
rs1292061 | 1.00[YRI][hapmap] |
rs1528493 | 0.86[JPT][hapmap] |
rs1534550 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs1554846 | 1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs16943748 | 0.86[JPT][hapmap] |
rs2150879 | 1.00[YRI][hapmap] |
rs2271303 | 0.82[JPT][hapmap] |
rs2272411 | 0.86[JPT][hapmap] |
rs2645477 | 1.00[YRI][hapmap] |
rs2645479 | 1.00[YRI][hapmap] |
rs2665397 | 1.00[YRI][hapmap] |
rs2665404 | 1.00[YRI][hapmap] |
rs2777898 | 1.00[YRI][hapmap] |
rs2777899 | 1.00[YRI][hapmap] |
rs28564580 | 0.91[CHB][hapmap] |
rs2877975 | 0.82[ASN][1000 genomes] |
rs3803861 | 0.81[JPT][hapmap] |
rs3803862 | 0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs3817158 | 0.87[JPT][hapmap] |
rs4968384 | 0.91[CHB][hapmap] |
rs6503923 | 0.91[CHB][hapmap] |
rs6503929 | 0.91[CHB][hapmap] |
rs71372120 | 0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs7207419 | 1.00[YRI][hapmap] |
rs7209369 | 0.91[CHB][hapmap] |
rs7210390 | 0.91[CHB][hapmap] |
rs7210832 | 0.91[CHB][hapmap] |
rs7210881 | 0.87[CHB][hapmap] |
rs7212825 | 0.86[JPT][hapmap] |
rs7223899 | 0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
rs7224631 | 0.81[JPT][hapmap];0.82[ASN][1000 genomes] |
rs8066828 | 0.91[CHB][hapmap] |
rs8069123 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs8070345 | 1.00[YRI][hapmap] |
rs8071796 | 0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs8081108 | 1.00[YRI][hapmap] |
rs8081395 | 1.00[YRI][hapmap] |
rs907066 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs916910 | 0.86[CHB][hapmap] |
rs9652857 | 1.00[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs9898835 | 0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs9899390 | 0.91[CHB][hapmap] |
rs9903999 | 0.82[CHB][hapmap] |
rs9905730 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs9909087 | 0.91[CHB][hapmap] |
rs9913684 | 0.91[CHB][hapmap] |
rs9913835 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
CLTC | Proximal transcriptional regulation |
CLTC | Distal transcriptional regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014