SNP Report
Basic Infomation
| Name | rs8081108 dbSNP |
|---|---|
| Location | chr:17,57801597 |
| Allele | G/T/A/C |
LD-proxy of rSNPs(r2>0.8) (count: 44)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11650106 | 1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs1292032 | 0.88[CEU][hapmap] |
| rs1292034 | 0.89[ASW][hapmap];0.84[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap] |
| rs1292045 | 0.81[CHB][hapmap];0.81[JPT][hapmap];0.87[MEX][hapmap] |
| rs1292053 | 0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap] |
| rs1292060 | 0.81[CHD][hapmap];0.85[JPT][hapmap] |
| rs1292061 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap] |
| rs12947232 | 0.84[AFR][1000 genomes];0.82[ASN][1000 genomes] |
| rs1295925 | 0.81[CHD][hapmap];0.90[JPT][hapmap] |
| rs1295927 | 1.00[ASW][hapmap];0.92[CEU][hapmap];0.91[CHB][hapmap];0.81[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap] |
| rs1534550 | 1.00[YRI][hapmap] |
| rs2063353 | 0.96[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap] |
| rs2150879 | 0.95[CEU][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2333563 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs2333617 | 0.90[JPT][hapmap] |
| rs2453913 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs2645466 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs2645477 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2645479 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];1.00[YRI][hapmap] |
| rs2645482 | 0.89[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.92[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap] |
| rs2645483 | 0.90[JPT][hapmap] |
| rs2645490 | 0.90[JPT][hapmap] |
| rs2665397 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2665404 | 1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.80[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs2777884 | 0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2777885 | 0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs2777889 | 0.90[JPT][hapmap] |
| rs2777898 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2777899 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.86[ASN][1000 genomes] |
| rs4968389 | 1.00[YRI][hapmap] |
| rs6503923 | 0.80[ASW][hapmap] |
| rs6503929 | 0.80[ASW][hapmap] |
| rs7207419 | 0.84[LWK][hapmap];1.00[YRI][hapmap] |
| rs7209369 | 0.80[ASW][hapmap] |
| rs7210832 | 0.80[ASW][hapmap] |
| rs7224006 | 0.81[CHD][hapmap];0.90[JPT][hapmap] |
| rs8065615 | 0.80[ASN][1000 genomes] |
| rs8067354 | 0.90[JPT][hapmap] |
| rs8070345 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8081395 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8081468 | 0.85[CHD][hapmap];0.90[JPT][hapmap] |
| rs9900133 | 0.80[ASN][1000 genomes] |
| rs9909087 | 0.80[ASW][hapmap] |
| rs9913684 | 0.80[ASW][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014