SNP Report
Basic Infomation
| Name | rs9900133 dbSNP |
|---|---|
| Location | chr:17,57802047 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11870590 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2333563 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2453913 | 0.81[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2482455 | 0.84[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2645466 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs2645483 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2777889 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2777898 | 0.84[ASN][1000 genomes] |
| rs4622571 | 0.80[ASN][1000 genomes] |
| rs6503939 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8065615 | 0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8067354 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8070345 | 0.83[ASN][1000 genomes] |
| rs8081108 | 0.80[ASN][1000 genomes] |
| rs8081395 | 0.84[ASN][1000 genomes] |
| rs8081468 | 0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9896742 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014