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rVarBase
SNP Report
Basic Infomation
Name
rs11870590  
dbSNP
Location
chr:17,57802152
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2333563
0.84[ASN][1000 genomes]
rs2453913
0.81[ASN][1000 genomes]
rs2482455
0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2645466
0.82[ASN][1000 genomes]
rs2645483
0.84[ASN][1000 genomes]
rs2777889
0.84[ASN][1000 genomes]
rs6503939
0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8065615
0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8067354
0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8081468
0.84[ASN][1000 genomes]
rs9896742
0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9900133
0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
VMP1
Proximal transcriptional regulation
VMP1
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)