SNP Report
Basic Infomation
| Name | rs6503939 dbSNP |
|---|---|
| Location | chr:17,57823685 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 23)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11079390 | 0.80[ASN][1000 genomes] |
| rs11650106 | 0.81[ASN][1000 genomes] |
| rs11870590 | 0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1292060 | 0.80[ASN][1000 genomes] |
| rs1292065 | 0.81[ASN][1000 genomes] |
| rs1295925 | 0.81[ASN][1000 genomes] |
| rs2333563 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2333617 | 0.81[ASN][1000 genomes] |
| rs2453913 | 0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2482455 | 0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2645466 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2645477 | 0.81[ASN][1000 genomes] |
| rs2645483 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2777884 | 0.81[ASN][1000 genomes] |
| rs2777889 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2777899 | 0.81[ASN][1000 genomes] |
| rs4622571 | 0.82[ASN][1000 genomes] |
| rs7224006 | 0.81[ASN][1000 genomes] |
| rs8065615 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs8067354 | 0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8081468 | 0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9896742 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9900133 | 0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| VMP1 | Distal transcriptional regulation |
| MIR21 | Distal transcriptional regulation |
| ENSG00000201524 | Distal transcriptional regulation |
| VMP1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014