SNP Report

Basic Infomation

Name	rs2482455 dbSNP
Location	chr:17,57849456
Allele	G/A

LD-proxy of rSNPs(r²>0.8) (count: 28)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11079390	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11650106	0.83[ASN][1000 genomes]
rs11870590	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1292060	0.95[CEU][hapmap];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs1292065	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1295925	0.90[CEU][hapmap];0.83[ASN][1000 genomes]
rs2150879	0.80[ASN][1000 genomes]
rs2333563	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2333617	0.95[CEU][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2453913	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2645466	0.95[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2645477	0.83[ASN][1000 genomes]
rs2645483	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2645490	0.81[CEU][hapmap]
rs2665397	0.82[ASN][1000 genomes]
rs2777884	0.83[ASN][1000 genomes]
rs2777885	0.82[ASN][1000 genomes]
rs2777889	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2777899	0.83[ASN][1000 genomes]
rs4622571	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57510610	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6503939	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7224006	0.95[CEU][hapmap];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8065615	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8067354	1.00[CEU][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8081468	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9896742	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9900133	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
VMP1	Proximal transcriptional regulation
VMP1	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)