SNP Report
Name | rs9896742   dbSNP |
---|---|
Location | chr:17,57826530 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11079390 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs11650106 | 0.85[ASN][1000 genomes] |
rs11870590 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1292060 | 0.84[AMR][1000 genomes];0.84[ASN][1000 genomes] |
rs1292065 | 0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs1295925 | 0.85[ASN][1000 genomes] |
rs2150879 | 0.82[ASN][1000 genomes] |
rs2333563 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2333617 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs2453913 | 0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2482455 | 0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs2645466 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2645477 | 0.85[ASN][1000 genomes] |
rs2645483 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2665397 | 0.84[ASN][1000 genomes] |
rs2777884 | 0.85[ASN][1000 genomes] |
rs2777885 | 0.84[ASN][1000 genomes] |
rs2777889 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2777899 | 0.85[ASN][1000 genomes] |
rs4257266 | 0.81[ASN][1000 genomes] |
rs4622571 | 0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs57510610 | 0.81[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs6503939 | 0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs7224006 | 0.81[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs8065615 | 0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs8067354 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs8081468 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs9900133 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes] |
Symbol | Regulation type |
---|---|
VMP1 | Distal transcriptional regulation |
PTRH2 | Distal transcriptional regulation |
MIR21 | Distal transcriptional regulation |
ENSG00000201524 | Distal transcriptional regulation |
RNF13 | Distal transcriptional regulation |
ZMYND8 | Distal transcriptional regulation |
VMP1 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014